Bookcover of An Analysis Pipeline and its Application on the Cucurbita pepo Genome
Booktitle:

An Analysis Pipeline and its Application on the Cucurbita pepo Genome

An Automated Analysis Pipeline for Next Generation Sequencing Data

AV Akademikerverlag (2012-04-04 )

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ISBN-13:

978-3-639-39222-7

ISBN-10:
3639392221
EAN:
9783639392227
Book language:
English
Blurb/Shorttext:
First insights into the genome of Cucurbita pepo are presented in this thesis. 15.67 percent of the 2,349,855 sequence reads generated with Roche’s 454 Pryosequencer received a classification in preprocessing. Of the remaining sequence reads 38.82% were classified as repeats, 11.08 percent as gene coding region, 7.08 percent as chloroplast and 5.39 percent as mitochondrial sequences. A comparison with the genome of cucumber reinforces this distribution. Moreover, this thesis describes an automated analysis pipeline for genome analyses. It is equipped with a set of newly developed components to perform whole genome analyses with next generation sequencing datasets, to store the obtained results into a database and to visualize them on a web interface. Comparisons with state of the art analysis pipelines show that its visualization capabilities and automatic input checker are rare but very helpful features.
Publishing house:
AV Akademikerverlag
Website:
http://www.akademikerverlag.de/
By (author) :
Richard Schobesberger
Number of pages:
76
Published at:
2012-04-04
Stock:
Available
Category:
Informatics
Price:
29.95 €
Keywords:
Bioinformatik, analysis, Pipeline, Genome, NGS Whole Genome Analysis, Cucurbita Pepo, Pumpkin

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